Glyma08g06900 - SoyBase

SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g06900

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4950189
stop:	4953020
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G58290	AT	Annotation by Michelle Graham. TAIR10: Glutamyl-tRNA reductase family protein \| chr1:21624028-21626051 REVERSE LENGTH=543	SoyBase	E_val: 0	ISS
GO:0000302	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species	SoyBase	N/A	ISS
GO:0006779	GO-bp	Annotation by Michelle Graham. GO Biological Process: porphyrin-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0006783	GO-bp	Annotation by Michelle Graham. GO Biological Process: heme biosynthetic process	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0010039	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to iron ion	SoyBase	N/A	ISS
GO:0015995	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process	SoyBase	N/A	ISS
GO:0033014	GO-bp	Annotation by Michelle Graham. GO Biological Process: tetrapyrrole biosynthetic process	SoyBase	N/A	ISS
GO:0055072	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008883	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutamyl-tRNA reductase activity	SoyBase	N/A	ISS
GO:0050661	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NADP binding	SoyBase	N/A	ISS
PTHR13812	Panther	ORNITHINE CYCLODEAMINASE-RELATED	JGI		ISS
PTHR13812:SF14	Panther	GLUTAMYL-TRNA REDUCTASE	JGI		ISS
PF00745	PFAM	Glutamyl-tRNAGlu reductase, dimerisation domain	JGI		ISS
PF01488	PFAM	Shikimate / quinate 5-dehydrogenase	JGI		ISS
PF05201	PFAM	Glutamyl-tRNAGlu reductase, N-terminal domain	JGI		ISS
UniRef100_I1KQV2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutamyl-tRNA reductase n=1 Tax=Glycine max RepID=I1KQV2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KQV2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Glutamyl-tRNA reductase n=1 Tax=Glycine max RepID=I1KQV2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g06900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06900

Paralog	Evidence	Comments
Glyma07g30350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g064700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g06900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g06900

Limit To All Plant Sequences

>Glyma08g06900.1   sequence type=CDS   gene model=Glyma08g06900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCCCTCGGTAGATCCTCCGCTGCCGCCACCACCTCCCTCTCCTCCTCCTCCGCCCGATTCCGCCGCTCCCTCCACCTACCGCCTTCCCAACTCTCCTTCCCGCGCGCGCGCTTTTCCGTCAACGCCACGTGCCCCTTCTTCTCCGATAACAATGGCAATAAGATTTCCCTTCCCCAAGACGTCGTCGCTTCCAAACCCTCCCCTCTCGAGTTGCTCAAAACTTCCGCCGCCGACAGATATACGAAGGAAAAGAGTAGCATTATTTGCATAGGGCTGAACATTCACACTGCTCCCGTTGAGATGCGTGAGAAGCTTTCCATTCCAGAATCGCATTGGGCTCAGGTCATCAAGGACCTTTGCGCTTTGAATCACATCGAAGAAGCCGCGGTTCTCAGCACGTGCAATCGCATGGAAATCTATGTTGTGGCTCTCTCTCAGCACCGTGGTGTTAAGGAGGTTACTGATTGGATGTCTAAGGTGAGTGGGATTTCAATACCTGAGCTTCGGGAGCACCAAGTTTTGCTGTATAACGCGTACGCCGCGCAGCATCTATTTGAAGTGGCGTCAGGGCTTGACTCACTTGTTCTTGGGGAAGGTCAAATTCTTGCTCAGGTGAAGCAGGTTGTGAAAGCTGGACAGGGAGTGCCTGGTTTTGATAAGAAAATCAGTGGTTTGTTCAAGCAGGCGATATCGGTTGGGAAGCGGGTTAGAACCGAGACTAACATTTCATCTGGATCAGTTTCTGTAAGCTCGGCTGCTGTGGAGCTTGCACTGATGAAGCTACCGGATTCCTCCTTTGCTGATTCTGGAGTGTTGGTGGTTGGTGCTGGGAAGATGGGGAAGCTTGTGATTAAGCATTTGGCTGCCAAAGGTTGCAGAAAGATGGTTGTTGTTAACAGGACTGAAGAGAAAGTTAATGCCATTCGGAAAGAGTTGAAGGATGTTGAGATTCTGTTTAGACCAATTTCAGATATGCTGGCGTGTGCTGCCGAAGCTGATGTGATCTTCACCAGCACGACGTCTGAATCATCGTTGTTTTCTAAAGAGAATGTGCAGATGCTTCCTCTGGTTAGTCATGGGAGAAGGCGGCTTTTTGTTGATATATCTATTCCTAGGAATGTGGAACCGAGTGTCTCGGATCTGGAGACTGCACTTGTGTACAATGTGGATGATCTGAAGGAAGTTGTTGCAGCTAACAAGGAGGACAGGCTTCAGAAAGCTGAGGAAGCCCGAGGAATTATACTAGAGGAGTTGAATAAATTTGAAGCGTGGAAAGACTCTCTGGAAACTGTTCCTACTATTAAGAAGTTTAGAGCTTATGTTGAGAGGATAAGAGCCTCTGAGATGGAGAAGTGTTTGTCGAAGATGGGCCCTGATGTCTCAAAGCAACACAAAGATGCAATTTATGCCCTTAGTATGGGTATTGTGAATAAGCTACTTCATGGTCCCATGCAGCACCTAAGGTGTGATGGGAAAAATGATAGTAGTCTGAGTGAAGTACTTGAGAATATGCGCGCCCTTAACAGAATGTATGATCTTGAGACAGAAACTTCCTTGATCGAAGAAAAGATCAGAGTCAAGATGGAACGGGTTCAGAAGTAG

Predicted protein sequences of Glyma08g06900

Limit To All Plant Sequences

>Glyma08g06900.1   sequence type=predicted peptide   gene model=Glyma08g06900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAALGRSSAAATTSLSSSSARFRRSLHLPPSQLSFPRARFSVNATCPFFSDNNGNKISLPQDVVASKPSPLELLKTSAADRYTKEKSSIICIGLNIHTAPVEMREKLSIPESHWAQVIKDLCALNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTDWMSKVSGISIPELREHQVLLYNAYAAQHLFEVASGLDSLVLGEGQILAQVKQVVKAGQGVPGFDKKISGLFKQAISVGKRVRTETNISSGSVSVSSAAVELALMKLPDSSFADSGVLVVGAGKMGKLVIKHLAAKGCRKMVVVNRTEEKVNAIRKELKDVEILFRPISDMLACAAEADVIFTSTTSESSLFSKENVQMLPLVSHGRRRLFVDISIPRNVEPSVSDLETALVYNVDDLKEVVAANKEDRLQKAEEARGIILEELNKFEAWKDSLETVPTIKKFRAYVERIRASEMEKCLSKMGPDVSKQHKDAIYALSMGIVNKLLHGPMQHLRCDGKNDSSLSEVLENMRALNRMYDLETETSLIEEKIRVKMERVQK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain